diff --git a/agl/AUTHORS b/mm_agl/AUTHORS
similarity index 100%
rename from agl/AUTHORS
rename to mm_agl/AUTHORS
diff --git a/agl/CMakeLists.txt b/mm_agl/CMakeLists.txt
similarity index 97%
rename from agl/CMakeLists.txt
rename to mm_agl/CMakeLists.txt
index a37341d..88b9baa 100644
--- a/agl/CMakeLists.txt
+++ b/mm_agl/CMakeLists.txt
@@ -5,7 +5,7 @@ cmake_policy(SET CMP0011 NEW)
 cmake_policy(SET CMP0015 NEW)
 
 # set project name
-set (PROJECT agl)
+set (PROJECT mm_agl)
 # set additional cmake file
 include (${PROJECT}.cmake)
 
diff --git a/agl/COPYING b/mm_agl/COPYING
similarity index 100%
rename from agl/COPYING
rename to mm_agl/COPYING
diff --git a/agl/INSTALL b/mm_agl/INSTALL
similarity index 100%
rename from agl/INSTALL
rename to mm_agl/INSTALL
diff --git a/agl/README b/mm_agl/README
similarity index 69%
rename from agl/README
rename to mm_agl/README
index 8533b9b..c7a26a2 100644
--- a/agl/README
+++ b/mm_agl/README
@@ -1,9 +1,9 @@
-agl - program that creates PDB file with chosen aglomerate
+mm_agl - program that creates PDB file with chosen aglomerate
 Version: 1.0.1
 License: GPL
 
 Usage:
-  agl -a FILENAME -i FILENAME -c X,Y,Z -o FILEMANE [ -l LOGFILE ] [ -q ] [ -h ]
+  mm_agl -a FILENAME -i FILENAME -c X,Y,Z -o FILEMANE [ -l LOGFILE ] [ -q ] [ -h ]
 
 Parametrs:
   -a          - input file with aglomerates (in format statgen)
diff --git a/agl/logo.png b/mm_agl/logo.png
similarity index 100%
rename from agl/logo.png
rename to mm_agl/logo.png
diff --git a/agl/agl.cmake b/mm_agl/mm_agl.cmake
similarity index 100%
rename from agl/agl.cmake
rename to mm_agl/mm_agl.cmake
diff --git a/agl/agl.doxygen b/mm_agl/mm_agl.doxygen
similarity index 99%
rename from agl/agl.doxygen
rename to mm_agl/mm_agl.doxygen
index dcdaba2..1eed5f5 100644
--- a/agl/agl.doxygen
+++ b/mm_agl/mm_agl.doxygen
@@ -26,7 +26,7 @@ DOXYFILE_ENCODING      = UTF-8
 # identify the project. Note that if you do not use Doxywizard you need 
 # to put quotes around the project name if it contains spaces.
 
-PROJECT_NAME           = agl
+PROJECT_NAME           = mm_agl
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. 
 # This could be handy for archiving the generated documentation or 
diff --git a/agl/src/CMakeLists.txt b/mm_agl/src/CMakeLists.txt
similarity index 100%
rename from agl/src/CMakeLists.txt
rename to mm_agl/src/CMakeLists.txt
diff --git a/agl/src/Makefile b/mm_agl/src/Makefile
similarity index 100%
rename from agl/src/Makefile
rename to mm_agl/src/Makefile
diff --git a/agl/src/add_main.c b/mm_agl/src/add_main.c
similarity index 100%
rename from agl/src/add_main.c
rename to mm_agl/src/add_main.c
diff --git a/agl/src/add_main.h b/mm_agl/src/add_main.h
similarity index 100%
rename from agl/src/add_main.h
rename to mm_agl/src/add_main.h
diff --git a/agl/src/coords.c b/mm_agl/src/coords.c
similarity index 100%
rename from agl/src/coords.c
rename to mm_agl/src/coords.c
diff --git a/agl/src/coords.h b/mm_agl/src/coords.h
similarity index 100%
rename from agl/src/coords.h
rename to mm_agl/src/coords.h
diff --git a/agl/src/main.c b/mm_agl/src/main.c
similarity index 96%
rename from agl/src/main.c
rename to mm_agl/src/main.c
index 11831ca..0c654db 100644
--- a/agl/src/main.c
+++ b/mm_agl/src/main.c
@@ -2,7 +2,7 @@
  * @file
  */
 /**
- * @mainpage agl
+ * @mainpage mm_agl
  * @image latex ./logo.png
  *
  * @section intro_sec Introduction
@@ -24,7 +24,7 @@
  * @section How-To-Use How to use
  * Usage:
  * <pre>
- * agl -a AGL_INP -i INPUT -c X,Y,Z -o OUTPUT [ -l LOGFILE ] [ -q ] [ -h ]
+ * mm_agl -a AGL_INP -i INPUT -c X,Y,Z -o OUTPUT [ -l LOGFILE ] [ -q ] [ -h ]
  *
  * Parametrs:
  *    -a          - input file with aglomerates (in format statgen)
@@ -39,7 +39,7 @@
  * @page Install
  * 
  * @section Requirements Requirements
- * The application agl requires the following external stuff:
+ * The application mm_agl requires the following external stuff:
  * - cmake  >= 2.8
  * - gcc    >= 4.8
  *
@@ -126,13 +126,13 @@ int main(int argc, char *argv[])
   {
     if ((argv[i][0] == '-') && (argv[i][1] == 'h') && (argv[i][2] == '\0'))
     {
-      sprintf (tmp_str, "                                        agl\n");
+      sprintf (tmp_str, "                                     mm_agl\n");
       sprintf (tmp_str, "%sProgram for create PDB file with chosen aglomerate\n", tmp_str);
       sprintf (tmp_str, "%sVersion : 1.0.1                                                    License : GPL\n", tmp_str);
       sprintf (tmp_str, "%s                                                    Evgeniy Alekseev aka arcanis\n", tmp_str);
       sprintf (tmp_str, "%s                                                    E-mail : esalexeev@gmail.com\n\n", tmp_str);
       sprintf (tmp_str, "%sUsage:\n", tmp_str);
-      sprintf (tmp_str, "%sagl -a AGL_INP -i INPUT -c X,Y,Z -o OUTPUT [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
+      sprintf (tmp_str, "%smm_agl -a AGL_INP -i INPUT -c X,Y,Z -o OUTPUT [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
       sprintf (tmp_str, "%sParametrs:\n", tmp_str);
       sprintf (tmp_str, "%s  -a          - input file with aglomerates (in format statgen)\n", tmp_str);
       sprintf (tmp_str, "%s  -i          - input file with coordinates\n", tmp_str);
diff --git a/agl/src/messages.c b/mm_agl/src/messages.c
similarity index 100%
rename from agl/src/messages.c
rename to mm_agl/src/messages.c
diff --git a/agl/src/messages.h b/mm_agl/src/messages.h
similarity index 100%
rename from agl/src/messages.h
rename to mm_agl/src/messages.h
diff --git a/agl/src/print_struct.c b/mm_agl/src/print_struct.c
similarity index 100%
rename from agl/src/print_struct.c
rename to mm_agl/src/print_struct.c
diff --git a/agl/src/print_struct.h b/mm_agl/src/print_struct.h
similarity index 100%
rename from agl/src/print_struct.h
rename to mm_agl/src/print_struct.h
diff --git a/agl/src/read_agl.c b/mm_agl/src/read_agl.c
similarity index 100%
rename from agl/src/read_agl.c
rename to mm_agl/src/read_agl.c
diff --git a/agl/src/read_agl.h b/mm_agl/src/read_agl.h
similarity index 100%
rename from agl/src/read_agl.h
rename to mm_agl/src/read_agl.h
diff --git a/agl/src/select_mol.c b/mm_agl/src/select_mol.c
similarity index 100%
rename from agl/src/select_mol.c
rename to mm_agl/src/select_mol.c
diff --git a/agl/src/select_mol.h b/mm_agl/src/select_mol.h
similarity index 100%
rename from agl/src/select_mol.h
rename to mm_agl/src/select_mol.h
diff --git a/agl/src/set_center.c b/mm_agl/src/set_center.c
similarity index 100%
rename from agl/src/set_center.c
rename to mm_agl/src/set_center.c
diff --git a/agl/src/set_center.h b/mm_agl/src/set_center.h
similarity index 100%
rename from agl/src/set_center.h
rename to mm_agl/src/set_center.h
diff --git a/envir/AUTHORS b/mm_envir/AUTHORS
similarity index 100%
rename from envir/AUTHORS
rename to mm_envir/AUTHORS
diff --git a/envir/CMakeLists.txt b/mm_envir/CMakeLists.txt
similarity index 97%
rename from envir/CMakeLists.txt
rename to mm_envir/CMakeLists.txt
index 7ac6f6c..33e0374 100644
--- a/envir/CMakeLists.txt
+++ b/mm_envir/CMakeLists.txt
@@ -5,7 +5,7 @@ cmake_policy(SET CMP0011 NEW)
 cmake_policy(SET CMP0015 NEW)
 
 # set project name
-set (PROJECT envir)
+set (PROJECT mm_envir)
 # set additional cmake file
 include (${PROJECT}.cmake)
 
diff --git a/envir/COPYING b/mm_envir/COPYING
similarity index 100%
rename from envir/COPYING
rename to mm_envir/COPYING
diff --git a/envir/INSTALL b/mm_envir/INSTALL
similarity index 100%
rename from envir/INSTALL
rename to mm_envir/INSTALL
diff --git a/envir/README b/mm_envir/README
similarity index 61%
rename from envir/README
rename to mm_envir/README
index e312aeb..684edf4 100644
--- a/envir/README
+++ b/mm_envir/README
@@ -1,10 +1,10 @@
-envir - program that searchs environment for chosen molecule by geometric criterion
+mm_envir - program that searchs environment for chosen molecule by geometric criterion
 Version: 1.0.1
 License: GPL
 
 Usage:
-  envir -i FILENAME -c X,Y,Z -o FILEMANE [ -n NUM_OF_MOLECULE ] [ -r RADIUS ] 
-                                                 [ -l LOGFILE ] [ -q ] [ -h ]
+  mm_envir -i FILENAME -c X,Y,Z -o FILEMANE [ -n NUM_OF_MOLECULE ] [ -r RADIUS ] 
+                                                    [ -l LOGFILE ] [ -q ] [ -h ]
 
 Parametrs:
   -i          - input file with coordinates
diff --git a/envir/logo.png b/mm_envir/logo.png
similarity index 100%
rename from envir/logo.png
rename to mm_envir/logo.png
diff --git a/envir/envir.cmake b/mm_envir/mm_envir.cmake
similarity index 100%
rename from envir/envir.cmake
rename to mm_envir/mm_envir.cmake
diff --git a/envir/envir.doxygen b/mm_envir/mm_envir.doxygen
similarity index 99%
rename from envir/envir.doxygen
rename to mm_envir/mm_envir.doxygen
index 2e224d0..b5b7b5e 100644
--- a/envir/envir.doxygen
+++ b/mm_envir/mm_envir.doxygen
@@ -26,7 +26,7 @@ DOXYFILE_ENCODING      = UTF-8
 # identify the project. Note that if you do not use Doxywizard you need 
 # to put quotes around the project name if it contains spaces.
 
-PROJECT_NAME           = envir
+PROJECT_NAME           = mm_envir
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. 
 # This could be handy for archiving the generated documentation or 
diff --git a/envir/src/CMakeLists.txt b/mm_envir/src/CMakeLists.txt
similarity index 100%
rename from envir/src/CMakeLists.txt
rename to mm_envir/src/CMakeLists.txt
diff --git a/envir/src/Makefile b/mm_envir/src/Makefile
similarity index 100%
rename from envir/src/Makefile
rename to mm_envir/src/Makefile
diff --git a/envir/src/add_main.c b/mm_envir/src/add_main.c
similarity index 100%
rename from envir/src/add_main.c
rename to mm_envir/src/add_main.c
diff --git a/envir/src/add_main.h b/mm_envir/src/add_main.h
similarity index 100%
rename from envir/src/add_main.h
rename to mm_envir/src/add_main.h
diff --git a/envir/src/coords.c b/mm_envir/src/coords.c
similarity index 100%
rename from envir/src/coords.c
rename to mm_envir/src/coords.c
diff --git a/envir/src/coords.h b/mm_envir/src/coords.h
similarity index 100%
rename from envir/src/coords.h
rename to mm_envir/src/coords.h
diff --git a/envir/src/envir_search.c b/mm_envir/src/envir_search.c
similarity index 100%
rename from envir/src/envir_search.c
rename to mm_envir/src/envir_search.c
diff --git a/envir/src/envir_search.h b/mm_envir/src/envir_search.h
similarity index 100%
rename from envir/src/envir_search.h
rename to mm_envir/src/envir_search.h
diff --git a/envir/src/main.c b/mm_envir/src/main.c
similarity index 95%
rename from envir/src/main.c
rename to mm_envir/src/main.c
index 633cd17..4548cde 100644
--- a/envir/src/main.c
+++ b/mm_envir/src/main.c
@@ -2,7 +2,7 @@
  * @file
  */
 /**
- * @mainpage envir
+ * @mainpage mm_envir
  * @image latex ./logo.png
  *
  * @section intro_sec Introduction
@@ -24,7 +24,7 @@
  * @section How-To-Use How to use
  * Usage:
  * <pre>
- * envir -i INPUT -c X,Y,Z -o OUTPUT [ -n NUM_OF_MOLECULE ] [ -r RADIUS ] 
+ * mm_envir -i INPUT -c X,Y,Z -o OUTPUT [ -n NUM_OF_MOLECULE ] [ -r RADIUS ] 
  *                                           [ -l LOGFILE ] [ -q ] [ -h ]
  *
  * Parametrs:
@@ -41,7 +41,7 @@
  * @page Install
  * 
  * @section Requirements Requirements
- * The application envir requires the following external stuff:
+ * The application mm_envir requires the following external stuff:
  * - cmake  >= 2.8
  * - gcc    >= 4.8
  *
@@ -128,14 +128,14 @@ int main(int argc, char *argv[])
   {
     if ((argv[i][0] == '-') && (argv[i][1] == 'h') && (argv[i][2] == '\0'))
     {
-      sprintf (tmp_str, "                                        envir\n");
+      sprintf (tmp_str, "                                     mm_envir\n");
       sprintf (tmp_str, "%sProgram for search environment for chosen molecule by geometric criterion\n", tmp_str);
       sprintf (tmp_str, "%sVersion : 1.0.1                                                    License : GPL\n", tmp_str);
       sprintf (tmp_str, "%s                                                    Evgeniy Alekseev aka arcanis\n", tmp_str);
       sprintf (tmp_str, "%s                                                    E-mail : esalexeev@gmail.com\n\n", tmp_str);
       sprintf (tmp_str, "%sUsage:\n", tmp_str);
-      sprintf (tmp_str, "%senvir -i INPUT -c X,Y,Z -o OUTPUT [ -n NUM_OF_MOLECULE ] [ -r RADIUS ]\n", tmp_str);
-      sprintf (tmp_str, "%s                                          [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
+      sprintf (tmp_str, "%smm_envir -i INPUT -c X,Y,Z -o OUTPUT [ -n NUM_OF_MOLECULE ] [ -r RADIUS ]\n", tmp_str);
+      sprintf (tmp_str, "%s                                             [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
       sprintf (tmp_str, "%sParametrs:\n", tmp_str);
       sprintf (tmp_str, "%s  -i          - input file name\n", tmp_str);
       sprintf (tmp_str, "%s  -c          - cell size (float), A\n", tmp_str);
diff --git a/envir/src/messages.c b/mm_envir/src/messages.c
similarity index 100%
rename from envir/src/messages.c
rename to mm_envir/src/messages.c
diff --git a/envir/src/messages.h b/mm_envir/src/messages.h
similarity index 100%
rename from envir/src/messages.h
rename to mm_envir/src/messages.h
diff --git a/envir/src/print_struct.c b/mm_envir/src/print_struct.c
similarity index 100%
rename from envir/src/print_struct.c
rename to mm_envir/src/print_struct.c
diff --git a/envir/src/print_struct.h b/mm_envir/src/print_struct.h
similarity index 100%
rename from envir/src/print_struct.h
rename to mm_envir/src/print_struct.h
diff --git a/envir/src/set_center.c b/mm_envir/src/set_center.c
similarity index 100%
rename from envir/src/set_center.c
rename to mm_envir/src/set_center.c
diff --git a/envir/src/set_center.h b/mm_envir/src/set_center.h
similarity index 100%
rename from envir/src/set_center.h
rename to mm_envir/src/set_center.h
diff --git a/radf/AUTHORS b/mm_radf/AUTHORS
similarity index 100%
rename from radf/AUTHORS
rename to mm_radf/AUTHORS
diff --git a/radf/CMakeLists.txt b/mm_radf/CMakeLists.txt
similarity index 97%
rename from radf/CMakeLists.txt
rename to mm_radf/CMakeLists.txt
index a083524..cc49d11 100644
--- a/radf/CMakeLists.txt
+++ b/mm_radf/CMakeLists.txt
@@ -5,7 +5,7 @@ cmake_policy(SET CMP0011 NEW)
 cmake_policy(SET CMP0015 NEW)
 
 # set project name
-set (PROJECT radf)
+set (PROJECT mm_radf)
 # set additional cmake file
 include (${PROJECT}.cmake)
 
diff --git a/radf/COPYING b/mm_radf/COPYING
similarity index 100%
rename from radf/COPYING
rename to mm_radf/COPYING
diff --git a/radf/INSTALL b/mm_radf/INSTALL
similarity index 100%
rename from radf/INSTALL
rename to mm_radf/INSTALL
diff --git a/radf/README b/mm_radf/README
similarity index 77%
rename from radf/README
rename to mm_radf/README
index e952e84..3342ac2 100644
--- a/radf/README
+++ b/mm_radf/README
@@ -1,11 +1,11 @@
-radf - program that calculates radial distribution function (RDF) or radial-angles 
+mm_radf - program that calculates radial distribution function (RDF) or radial-angles 
 distribution function
 Version : 1.0.1
 License : GPL
 
 Usage:
-radf -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ] 
-                [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]
+mm_radf -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ] 
+                   [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]
 
 Parametrs:
   -i          - mask of input files
diff --git a/radf/logo.png b/mm_radf/logo.png
similarity index 100%
rename from radf/logo.png
rename to mm_radf/logo.png
diff --git a/radf/radf.cmake b/mm_radf/mm_radf.cmake
similarity index 100%
rename from radf/radf.cmake
rename to mm_radf/mm_radf.cmake
diff --git a/radf/radf.doxygen b/mm_radf/mm_radf.doxygen
similarity index 99%
rename from radf/radf.doxygen
rename to mm_radf/mm_radf.doxygen
index 5454313..eef5980 100644
--- a/radf/radf.doxygen
+++ b/mm_radf/mm_radf.doxygen
@@ -26,7 +26,7 @@ DOXYFILE_ENCODING      = UTF-8
 # identify the project. Note that if you do not use Doxywizard you need 
 # to put quotes around the project name if it contains spaces.
 
-PROJECT_NAME           = radf
+PROJECT_NAME           = mm_radf
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. 
 # This could be handy for archiving the generated documentation or 
diff --git a/radf/src/CMakeLists.txt b/mm_radf/src/CMakeLists.txt
similarity index 100%
rename from radf/src/CMakeLists.txt
rename to mm_radf/src/CMakeLists.txt
diff --git a/radf/src/Makefile b/mm_radf/src/Makefile
similarity index 100%
rename from radf/src/Makefile
rename to mm_radf/src/Makefile
diff --git a/radf/src/add_main.c b/mm_radf/src/add_main.c
similarity index 100%
rename from radf/src/add_main.c
rename to mm_radf/src/add_main.c
diff --git a/radf/src/add_main.h b/mm_radf/src/add_main.h
similarity index 100%
rename from radf/src/add_main.h
rename to mm_radf/src/add_main.h
diff --git a/radf/src/coords.c b/mm_radf/src/coords.c
similarity index 100%
rename from radf/src/coords.c
rename to mm_radf/src/coords.c
diff --git a/radf/src/coords.h b/mm_radf/src/coords.h
similarity index 100%
rename from radf/src/coords.h
rename to mm_radf/src/coords.h
diff --git a/radf/src/main.c b/mm_radf/src/main.c
similarity index 95%
rename from radf/src/main.c
rename to mm_radf/src/main.c
index 686dd93..68f5bc4 100644
--- a/radf/src/main.c
+++ b/mm_radf/src/main.c
@@ -2,7 +2,7 @@
  * @file
  */
 /**
- * @mainpage radf
+ * @mainpage mm_radf
  * @image latex ./logo.png
  *
  * @section intro_sec Introduction
@@ -25,8 +25,8 @@
  * @section How-To-Use How to use
  * Usage:
  * <pre>
- * radf -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ] 
- *                 [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]
+ * mm_radf -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ] 
+ *                    [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]
  * Parametrs:
  *    -i          - mask of input files
  *    -s          - trajectory steps (integer)
@@ -48,7 +48,7 @@
  * @page Install
  * 
  * @section Requirements Requirements
- * The application radf requires the following external stuff:
+ * The application mm_radf requires the following external stuff:
  * - cmake  >= 2.8
  * - gcc    >= 4.8
  *
@@ -144,15 +144,15 @@ int main(int argc, char *argv[])
   {
     if ((argv[i][0] == '-') && (argv[i][1] == 'h') && (argv[i][2] == '\0'))
     {
-      sprintf (tmp_str, "                                        radf\n");
+      sprintf (tmp_str, "                                    mm_radf\n");
       sprintf (tmp_str, "%sProgram that calculates radial distribution function (RDF) or radial-angles\n", tmp_str);
       sprintf (tmp_str, "%sdistribution function\n", tmp_str);
       sprintf (tmp_str, "%sVersion : 1.0.1                                                    License : GPL\n", tmp_str);
       sprintf (tmp_str, "%s                                                    Evgeniy Alekseev aka arcanis\n", tmp_str);
       sprintf (tmp_str, "%s                                                    E-mail : esalexeev@gmail.com\n\n", tmp_str);
       sprintf (tmp_str, "%sUsage:\n", tmp_str);
-      sprintf (tmp_str, "%sradf -i INPUT -s FIRST,LAST -c X,Y,Z -at ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ]\n", tmp_str);
-      sprintf (tmp_str, "%s                 [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
+      sprintf (tmp_str, "%smm_radf -i INPUT -s FIRST,LAST -c X,Y,Z -at ... -o OUTPUT [ -r MIN,MAX ] [ -rs R_STEP ]\n", tmp_str);
+      sprintf (tmp_str, "%s                    [ -a MIN,MAX ] [ -as ANG_STEP ] [ -m ] [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
       sprintf (tmp_str, "%sParametrs:\n", tmp_str);
       sprintf (tmp_str, "%s  -i          - mask of input files\n", tmp_str);
       sprintf (tmp_str, "%s  -s          - trajectory steps (integer)\n", tmp_str);
diff --git a/radf/src/messages.c b/mm_radf/src/messages.c
similarity index 100%
rename from radf/src/messages.c
rename to mm_radf/src/messages.c
diff --git a/radf/src/messages.h b/mm_radf/src/messages.h
similarity index 100%
rename from radf/src/messages.h
rename to mm_radf/src/messages.h
diff --git a/radf/src/radf.c b/mm_radf/src/radf.c
similarity index 100%
rename from radf/src/radf.c
rename to mm_radf/src/radf.c
diff --git a/radf/src/radf.h b/mm_radf/src/radf.h
similarity index 100%
rename from radf/src/radf.h
rename to mm_radf/src/radf.h
diff --git a/radf/src/radf_proc.c b/mm_radf/src/radf_proc.c
similarity index 100%
rename from radf/src/radf_proc.c
rename to mm_radf/src/radf_proc.c
diff --git a/radf/src/radf_proc.h b/mm_radf/src/radf_proc.h
similarity index 100%
rename from radf/src/radf_proc.h
rename to mm_radf/src/radf_proc.h
diff --git a/statgen/AUTHORS b/mm_statgen/AUTHORS
similarity index 100%
rename from statgen/AUTHORS
rename to mm_statgen/AUTHORS
diff --git a/statgen/CMakeLists.txt b/mm_statgen/CMakeLists.txt
similarity index 97%
rename from statgen/CMakeLists.txt
rename to mm_statgen/CMakeLists.txt
index 17f856c..c822ceb 100644
--- a/statgen/CMakeLists.txt
+++ b/mm_statgen/CMakeLists.txt
@@ -5,7 +5,7 @@ cmake_policy(SET CMP0011 NEW)
 cmake_policy(SET CMP0015 NEW)
 
 # set project name
-set (PROJECT statgen)
+set (PROJECT mm_statgen)
 # set additional cmake file
 include (${PROJECT}.cmake)
 
diff --git a/statgen/COPYING b/mm_statgen/COPYING
similarity index 100%
rename from statgen/COPYING
rename to mm_statgen/COPYING
diff --git a/statgen/INSTALL b/mm_statgen/INSTALL
similarity index 100%
rename from statgen/INSTALL
rename to mm_statgen/INSTALL
diff --git a/statgen/README b/mm_statgen/README
similarity index 70%
rename from statgen/README
rename to mm_statgen/README
index a3812b4..5517054 100644
--- a/statgen/README
+++ b/mm_statgen/README
@@ -1,10 +1,10 @@
-statgen - program that analyzes molecular dynamic trajectories using topological analysis
+mm_statgen - program that analyzes molecular dynamic trajectories using topological analysis
 Version: 1.0.1
 License: GPL
 
 Usage:
-  statgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ] 
-                                                  [ -l LOGFILE ] [ -q ] [ -h ]
+  mm_statgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ] 
+                                                     [ -l LOGFILE ] [ -q ] [ -h ]
 
 Parametrs:
   -i          - mask of input files
diff --git a/statgen/logo.png b/mm_statgen/logo.png
similarity index 100%
rename from statgen/logo.png
rename to mm_statgen/logo.png
diff --git a/statgen/statgen.cmake b/mm_statgen/mm_statgen.cmake
similarity index 100%
rename from statgen/statgen.cmake
rename to mm_statgen/mm_statgen.cmake
diff --git a/statgen/statgen.doxygen b/mm_statgen/mm_statgen.doxygen
similarity index 99%
rename from statgen/statgen.doxygen
rename to mm_statgen/mm_statgen.doxygen
index 7ad16e6..61c1240 100644
--- a/statgen/statgen.doxygen
+++ b/mm_statgen/mm_statgen.doxygen
@@ -26,7 +26,7 @@ DOXYFILE_ENCODING      = UTF-8
 # identify the project. Note that if you do not use Doxywizard you need 
 # to put quotes around the project name if it contains spaces.
 
-PROJECT_NAME           = statgen
+PROJECT_NAME           = mm_statgen
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. 
 # This could be handy for archiving the generated documentation or 
diff --git a/statgen/src/CMakeLists.txt b/mm_statgen/src/CMakeLists.txt
similarity index 100%
rename from statgen/src/CMakeLists.txt
rename to mm_statgen/src/CMakeLists.txt
diff --git a/statgen/src/Makefile b/mm_statgen/src/Makefile
similarity index 100%
rename from statgen/src/Makefile
rename to mm_statgen/src/Makefile
diff --git a/statgen/src/add_main.c b/mm_statgen/src/add_main.c
similarity index 100%
rename from statgen/src/add_main.c
rename to mm_statgen/src/add_main.c
diff --git a/statgen/src/add_main.h b/mm_statgen/src/add_main.h
similarity index 100%
rename from statgen/src/add_main.h
rename to mm_statgen/src/add_main.h
diff --git a/statgen/src/coords.c b/mm_statgen/src/coords.c
similarity index 100%
rename from statgen/src/coords.c
rename to mm_statgen/src/coords.c
diff --git a/statgen/src/coords.h b/mm_statgen/src/coords.h
similarity index 100%
rename from statgen/src/coords.h
rename to mm_statgen/src/coords.h
diff --git a/statgen/src/graph.c b/mm_statgen/src/graph.c
similarity index 100%
rename from statgen/src/graph.c
rename to mm_statgen/src/graph.c
diff --git a/statgen/src/graph.h b/mm_statgen/src/graph.h
similarity index 100%
rename from statgen/src/graph.h
rename to mm_statgen/src/graph.h
diff --git a/statgen/src/main.c b/mm_statgen/src/main.c
similarity index 96%
rename from statgen/src/main.c
rename to mm_statgen/src/main.c
index a9f35b5..20789f9 100644
--- a/statgen/src/main.c
+++ b/mm_statgen/src/main.c
@@ -2,7 +2,7 @@
  * @file
  */
 /**
- * @mainpage statgen 
+ * @mainpage mm_statgen 
  * @image latex ./logo.png
  *
  * @section intro_sec Introduction
@@ -24,8 +24,8 @@
  * @section How-To-Use How to use
  * Usage:
  * <pre>
- * statgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ] 
- *                                                 [ -l LOGFILE ] [ -q ] [ -h ]
+ * mm_statgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ] 
+ *                                                    [ -l LOGFILE ] [ -q ] [ -h ]
  *
  * Parametrs:
  *    -i          - mask of input files
@@ -44,7 +44,7 @@
  * @page Install
  * 
  * @section Requirements Requirements
- * The application statgen requires the following external stuff:
+ * The application mm_statgen requires the following external stuff:
  * - cmake  >= 2.8
  * - gcc    >= 4.8
  *
@@ -160,14 +160,14 @@ int main (int argc, char *argv[])
   {
     if ((argv[i][0] == '-') && (argv[i][1] == 'h') && (argv[i][2] == '\0'))
     {
-      sprintf (tmp_str, "                                        statgen\n");
+      sprintf (tmp_str, "                                     mm_statgen\n");
       sprintf (tmp_str, "%sProgram for analyze molecular dynamic trajectories\n", tmp_str);
       sprintf (tmp_str, "%sVersion : 1.0.1                                                    License : GPL\n", tmp_str);
       sprintf (tmp_str, "%s                                                    Evgeniy Alekseev aka arcanis\n", tmp_str);
       sprintf (tmp_str, "%s                                                    E-mail : esalexeev@gmail.com\n\n", tmp_str);
       sprintf (tmp_str, "%sUsage:\n", tmp_str);
-      sprintf (tmp_str, "%sstatgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ]\n", tmp_str);
-      sprintf (tmp_str, "%s                                                [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
+      sprintf (tmp_str, "%smm_statgen -i INPUT -s FIRST,LAST -c X,Y,Z -a ... -r ... -o OUTPUT [ -g DEPTH ]\n", tmp_str);
+      sprintf (tmp_str, "%s                                                   [ -l LOGFILE ] [ -q ] [ -h ]\n\n", tmp_str);
       sprintf (tmp_str, "%sParametrs:\n", tmp_str);
       sprintf (tmp_str, "%s  -i          - mask of input files\n", tmp_str);
       sprintf (tmp_str, "%s  -s          - trajectory steps (integer)\n", tmp_str);
diff --git a/statgen/src/messages.c b/mm_statgen/src/messages.c
similarity index 100%
rename from statgen/src/messages.c
rename to mm_statgen/src/messages.c
diff --git a/statgen/src/messages.h b/mm_statgen/src/messages.h
similarity index 100%
rename from statgen/src/messages.h
rename to mm_statgen/src/messages.h
diff --git a/statgen/src/stat_print.c b/mm_statgen/src/stat_print.c
similarity index 100%
rename from statgen/src/stat_print.c
rename to mm_statgen/src/stat_print.c
diff --git a/statgen/src/stat_print.h b/mm_statgen/src/stat_print.h
similarity index 100%
rename from statgen/src/stat_print.h
rename to mm_statgen/src/stat_print.h
diff --git a/statgen/src/stat_select.c b/mm_statgen/src/stat_select.c
similarity index 100%
rename from statgen/src/stat_select.c
rename to mm_statgen/src/stat_select.c
diff --git a/statgen/src/stat_select.h b/mm_statgen/src/stat_select.h
similarity index 100%
rename from statgen/src/stat_select.h
rename to mm_statgen/src/stat_select.h
diff --git a/statgen/src/stat_sort.c b/mm_statgen/src/stat_sort.c
similarity index 100%
rename from statgen/src/stat_sort.c
rename to mm_statgen/src/stat_sort.c
diff --git a/statgen/src/stat_sort.h b/mm_statgen/src/stat_sort.h
similarity index 100%
rename from statgen/src/stat_sort.h
rename to mm_statgen/src/stat_sort.h
diff --git a/statgen/src/summary_stat.c b/mm_statgen/src/summary_stat.c
similarity index 100%
rename from statgen/src/summary_stat.c
rename to mm_statgen/src/summary_stat.c
diff --git a/statgen/src/summary_stat.h b/mm_statgen/src/summary_stat.h
similarity index 100%
rename from statgen/src/summary_stat.h
rename to mm_statgen/src/summary_stat.h