mirror of
https://github.com/arcan1s/moldyn.git
synced 2025-07-15 06:45:50 +00:00
+ added CMakeLists.txt
+ added headers + added library 'add_main.c' + some optimization
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@ -3,20 +3,18 @@
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* Usage:
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* printing_agl (input_file, output_file, number_of_molecules,
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* true_label_molecules, num_of_molecules_in_aglomerates, aglomerates,
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* statistic, type_of_aglomerate)
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* statistic, max_depth, type_of_aglomerate)
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*/
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#include <stdio.h>
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#include <stdlib.h>
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// prototype
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int graph_analyze (const int, const int *, const int, char *);
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#include "graph.h"
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int printing_agl (const char *input, const char *output, const int *connect,
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const int num_mol, const int *true_label_mol, const int *num_mol_agl,
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const int *agl, const int *stat, int *type_agl)
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const int *agl, const int *stat, const int max_depth, int *type_agl)
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/* input - name of file with coordinates
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* output - name of output file
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* connect - connectivity graph for all molecules
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@ -25,11 +23,11 @@ int printing_agl (const char *input, const char *output, const int *connect,
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* num_mol_agl - massive of numbers of molecule in aglomerates
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* agl - massive of aglomerates
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* stat - massive of statistics
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* max_depth - max depth for check cycles in graph analyze
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* type_agl - massive of numbers of aglomerate types
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*/
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{
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char iso[256];
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int i, j, k, *label_matrix, *matrix;
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int i, *iso, j, k, *label_matrix, *matrix;
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FILE *f_out;
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/* iso - isomorphic graph in database
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* label_matrix - massive of indexes of molecule
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@ -37,6 +35,7 @@ int printing_agl (const char *input, const char *output, const int *connect,
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* f_out - output file
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*/
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iso = (int *) malloc (max_depth * sizeof (int));
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f_out = fopen (output, "a");
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// head
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@ -71,10 +70,36 @@ int printing_agl (const char *input, const char *output, const int *connect,
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}
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// graph topology analyze
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graph_analyze (num_mol_agl[i], matrix, 3, iso);
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if (max_depth > 0)
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graph_analyze (num_mol_agl[i], matrix, max_depth, iso);
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// printing class of aglomerate
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fprintf (f_out, "AGL=%i=%s\n", num_mol_agl[i], iso);
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fprintf (f_out, "AGL=%i=", num_mol_agl[i]);
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for (j=0; j<max_depth; j++)
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{
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// number of tails
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if (j == 0)
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if (iso[j] > 2)
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// branched
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type_agl[3]++;
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else
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// not branched
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type_agl[2]++;
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// number of cycles
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else if (j == 1)
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if (iso[j] > 0)
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// cycle
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type_agl[1]++;
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else
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// linear
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type_agl[0]++;
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else if (j > 1)
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// number of n_cycles
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type_agl[j+2] += iso[j];
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fprintf (f_out, "%i.", iso[j]);
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}
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fprintf (f_out, "\n");
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for (j=0; j<num_mol_agl[i]; j++)
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{
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fprintf (f_out, "%7i=", true_label_mol[agl[num_mol*i+j]]);
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@ -93,5 +118,6 @@ int printing_agl (const char *input, const char *output, const int *connect,
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fprintf (f_out, "---------------------------------------------------\n");
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fclose (f_out);
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free (iso);
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return 0;
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}
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